About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16267806_16272565_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16267806 - 16272565
Intron Length:
4760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
GTTTCTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
GTTTCTTTCACA
Flanking Amino Acid:
KGSLDSDNDDSDCPYTEKVP
Intron Amino Acid Position:
1037

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
69.9
40.7
Major BPS
72.8
0.57
1
81
30.3
Major PPT
84.7
0.78
0.8
79.7
32.4
Minor 5ss
35
-1.7
3.2
47.6
41.5
Minor BPS
70
0.62
1.7
79.83
36.4

Associated Gene:

Gene:
SLC4A4
Ensembl Gene ID:
ENSAPLG00000011271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044581
16075091 - 16274306
199216
ENSAPLT00000021013
16075091 - 16276211
201121
ENSAPLT00000011918
16055353 - 16275185
219833