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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16305038_16305256_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16305038 - 16305256
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCACC
5'SS Class:
major
3'SS Sequence:
TGCCCCACTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TAAATATTAACT
Flanking Amino Acid:
CGDDGALHARRYMFELSRRH
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.3
69.7
41.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
71.1
0.47
0.9
66.6
34.2
Minor 5ss
36.1
-1.6
2.7
44.7
42.9
Minor BPS
61.3
0.43
1.6
76.24
39.4

Associated Gene:

Gene:
GC
Ensembl Gene ID:
ENSAPLG00000011070
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011564
16304123 - 16310115
5993