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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16307642_16307744_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16307642 - 16307744
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGTTGA
5'SS Class:
major
3'SS Sequence:
TCCCTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAAGCAT
U12 Branch Point Sequence:
CCAACCCTAGGC
Flanking Amino Acid:
GADPSCYDAGSSALSAKSCG
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
65.9
42.7
Major BPS
47.3
-0.1
1.4
55.4
40.3
Major PPT
81.9
0.72
0.7
76.6
25.5
Minor 5ss
37.7
-1.4
3.1
40.4
45.8
Minor BPS
40.1
-0.7
2
44.45
43.3

Associated Gene:

Gene:
GC
Ensembl Gene ID:
ENSAPLG00000011070
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011564
16304123 - 16310115
5993