About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16308318_16310054_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16308318 - 16310054
Intron Length:
1737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCG
5'SS Class:
strong_major
3'SS Sequence:
TCTGCATTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TGATCCCAAACT
Flanking Amino Acid:
LFATTHAEHRGRAYVRDKVC
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
72.5
37.3
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
79.7
0.67
0.9
72.6
36.7
Minor 5ss
30.7
-2.2
3.3
39.2
46.2
Minor BPS
57.3
0.31
2
78.76
42.8

Associated Gene:

Gene:
GC
Ensembl Gene ID:
ENSAPLG00000011070
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011564
16304123 - 16310115
5993