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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16367169_16367241_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16367169 - 16367241
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGAGAC
U12 Branch Point Sequence:
AGCCCCTGAGAC
Flanking Amino Acid:
DLLIATYPKSGTTWLSEILD
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.5
38.7
Major BPS
46.7
-0.2
1.2
41.8
39.2
Major PPT
66.6
0.37
0.9
59.5
35.7
Minor 5ss
26.2
-2.7
2.9
22.7
37.4
Minor BPS
44.6
-0.4
1.7
49.92
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029701
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032726
16366481 - 16368645
2165