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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16367788_16367882_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16367788 - 16367882
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGGCT
5'SS Class:
major
3'SS Sequence:
CCCCATCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACCCAA
U12 Branch Point Sequence:
TTTCGGCTAACC
Flanking Amino Acid:
EFLEAFMNGKVAYGSWYEHV
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
67.1
35.3
Major BPS
48.6
-0
1.1
56.4
30.9
Major PPT
67.4
0.39
0.8
60
29.3
Minor 5ss
25
-2.9
3.6
38
47.1
Minor BPS
45.3
-0.3
2.6
68.8
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029701
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032726
16366481 - 16368645
2165