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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16367978_16368093_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16367978 - 16368093
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TGCCACCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
AGCACCAGCACT
Flanking Amino Acid:
LYLFYEDMKKDPQREVQKIL
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
65.6
0.35
0.9
57.4
33.1
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
42
-0.5
2.1
58.15
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029701
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032726
16366481 - 16368645
2165