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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16369808_16370390_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
16369808 - 16370390
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGGG
5'SS Class:
major
3'SS Sequence:
CTGTCCCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGTAC
U12 Branch Point Sequence:
CTGTCCCCACCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
58.7
46.2
Major BPS
48.6
-0
1.5
49.1
46
Major PPT
67.7
0.4
0.9
59.8
36.8
Minor 5ss
34.2
-1.8
3.6
46.8
48.5
Minor BPS
45.8
-0.3
2.1
60.08
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026321
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038940
16369386 - 16372014
2629