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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16374130_16394391_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16374130 - 16394391
Intron Length:
20262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGATACC
5'SS Class:
major
3'SS Sequence:
TTGCATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AGTTTTTGAAGC
Flanking Amino Acid:
CDRDRDRGERGAAGCV*
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
72.1
37.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
82.3
0.73
0.9
76.8
37
Minor 5ss
35
-1.7
3
46
42.3
Minor BPS
50.3
-0
1.7
61.74
37.6

Associated Gene:

Gene:
YTHDC1
Ensembl Gene ID:
ENSAPLG00000009921
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010362
16374110 - 16415503
41394