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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16395448_16397056_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16395448 - 16397056
Intron Length:
1609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTTGTGTC
5'SS Class:
major
3'SS Sequence:
AACTCTCTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATGTAACT
Flanking Amino Acid:
MGPPPPWQGMPPYPGMEQPP
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.2
66.1
37.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.5
0.51
0.8
66.5
34.6
Minor 5ss
39.8
-1.1
3.1
50.4
40.6
Minor BPS
63
0.49
2.2
88.66
36.3

Associated Gene:

Gene:
YTHDC1
Ensembl Gene ID:
ENSAPLG00000009921
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027908
16394268 - 16415503
21236
ENSAPLT00000025312
16394268 - 16415503
21236
ENSAPLT00000010362
16374110 - 16415503
41394
ENSAPLT00000041490
16394268 - 16415503
21236
ENSAPLT00000039475
16394268 - 16415503
21236