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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16397120_16397223_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16397120 - 16397223
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTGTCTTTCATT
Flanking Amino Acid:
GVRRDVFLNGSYNDYVREFH
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
69.7
43.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.5
0.75
0.7
82.2
28.1
Minor 5ss
39.2
-1.2
2.8
41
45.3
Minor BPS
60.1
0.4
1.8
74.76
43.2

Associated Gene:

Gene:
YTHDC1
Ensembl Gene ID:
ENSAPLG00000009921
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027908
16394268 - 16415503
21236
ENSAPLT00000025312
16394268 - 16415503
21236
ENSAPLT00000010362
16374110 - 16415503
41394
ENSAPLT00000041490
16394268 - 16415503
21236
ENSAPLT00000039475
16394268 - 16415503
21236