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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16397264_16397355_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16397264 - 16397355
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTCCCAACA
Flanking Amino Acid:
IKDPRYPEVDRRFSGVRRDV
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.4
0.57
0.9
71
34.4
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
56.7
0.21
1.9
73.29
38

Associated Gene:

Gene:
YTHDC1
Ensembl Gene ID:
ENSAPLG00000009921
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027908
16394268 - 16415503
21236
ENSAPLT00000025312
16394268 - 16415503
21236
ENSAPLT00000010362
16374110 - 16415503
41394
ENSAPLT00000041490
16394268 - 16415503
21236
ENSAPLT00000039475
16394268 - 16415503
21236