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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16401626_16403488_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16401626 - 16403488
Intron Length:
1863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTTG
5'SS Class:
major
3'SS Sequence:
TAACTAATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CACTACTGAACT
Flanking Amino Acid:
KPVKIGRDGQEIEPECGTQL
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
72.6
39.2
Major BPS
78.6
0.71
1
78.6
31
Major PPT
66.8
0.38
1
60.2
40
Minor 5ss
46.3
-0.4
2.4
58.6
46
Minor BPS
57.4
0.31
1.7
71.21
45

Associated Gene:

Gene:
YTHDC1
Ensembl Gene ID:
ENSAPLG00000009921
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025994
16401459 - 16415503
14045
ENSAPLT00000025312
16394268 - 16415503
21236
ENSAPLT00000010362
16374110 - 16415503
41394
ENSAPLT00000041490
16394268 - 16415503
21236
ENSAPLT00000039475
16394268 - 16415503
21236