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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16401626_16407360_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16401626 - 16407360
Intron Length:
5735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TAACTAATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CACTACTGAACT
Flanking Amino Acid:
HENVSLAKAKEIEPECGTQL
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
78.6
0.71
1
78.6
31
Major PPT
66.8
0.38
1
60.2
40
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
57.4
0.31
1.7
71.21
45

Associated Gene:

Gene:
YTHDC1
Ensembl Gene ID:
ENSAPLG00000009921
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027908
16394268 - 16415503
21236