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Intron Name: Anas_platyrhynchos_platyrhynchos_4_16404864_16407360_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16404864 - 16407360

Intron Length:

2497

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTGTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTCAT

U12 Branch Point Sequence:

ATTGTTTTGTTT

Flanking Amino Acid:

HENVSLAKAKGVWSTLPVNE

Intron Amino Acid Position:

395

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.1

1.11

0.7

89.3

17.5

Major BPS

78.3

0.7

0.8

77.7

26.1

Major PPT

82.4

0.73

0.9

81.2

36.5

Minor 5ss

39.5

-1.2

2.8

47.2

Minor BPS

40.6

-0.6

3.4

67.41

38.5

Associated Gene:

Gene:

YTHDC1

Ensembl Gene ID:

ENSAPLG00000009921

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025312

16394268 - 16415503

21236

ENSAPLT00000010362

16374110 - 16415503

41394

ENSAPLT00000041490

16394268 - 16415503

21236

ENSAPLT00000039475

16394268 - 16415503

21236

ENSAPLT00000025994

16401459 - 16415503

14045