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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16407456_16408061_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
16407456 - 16408061
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCATTT
5'SS Class:
weak_major
3'SS Sequence:
CTTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTCTGCTTATTT
Flanking Amino Acid:
LSSSVRAVQKDQTSKLKYIL
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.2
74.2
37.1
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
69.3
0.65
2.3
82.5
37.1
Minor BPS
58.9
0.36
2
79.24
43.6

Associated Gene:

Gene:
YTHDC1
Ensembl Gene ID:
ENSAPLG00000009921
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027908
16394268 - 16415503
21236
ENSAPLT00000025994
16401459 - 16415503
14045
ENSAPLT00000010362
16374110 - 16415503
41394
ENSAPLT00000041490
16394268 - 16415503
21236
ENSAPLT00000039475
16394268 - 16415503
21236