About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16408116_16408630_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
16408116 - 16408630
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGGCTAAACACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TTTGGCTAAACA
Flanking Amino Acid:
SGSSASESYAGSEKKHEKLS
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
82.4
30.8
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
58.7
0.2
1
51.4
41
Minor 5ss
58.1
0.27
2.3
76
39.6
Minor BPS
55.7
0.17
2.2
74.7
43.3

Associated Gene:

Gene:
YTHDC1
Ensembl Gene ID:
ENSAPLG00000009921
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025994
16401459 - 16415503
14045
ENSAPLT00000010362
16374110 - 16415503
41394
ENSAPLT00000041490
16394268 - 16415503
21236
ENSAPLT00000039475
16394268 - 16415503
21236
ENSAPLT00000027908
16394268 - 16415503
21236