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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16410412_16410542_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16410412 - 16410542
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTAAAT
5'SS Class:
major
3'SS Sequence:
CTTTAAACATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTTTCTTTAAAC
Flanking Amino Acid:
AKSSTPDGSERIRHDVDRRP
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
75.3
33.9
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
67.7
0.4
1
65
39.9
Minor 5ss
41.3
-1
2.9
57.7
46.5
Minor BPS
82.1
0.99
1.2
87.66
28.2

Associated Gene:

Gene:
YTHDC1
Ensembl Gene ID:
ENSAPLG00000009921
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025312
16394268 - 16415503
21236
ENSAPLT00000041490
16394268 - 16415503
21236
ENSAPLT00000010362
16374110 - 16415503
41394
ENSAPLT00000039475
16394268 - 16415503
21236
ENSAPLT00000027908
16394268 - 16415503
21236
ENSAPLT00000025994
16401459 - 16415503
14045