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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16411603_16413776_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16411603 - 16413776
Intron Length:
2174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGAAAT
5'SS Class:
major
3'SS Sequence:
CTTCTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTTTTTAACT
Flanking Amino Acid:
VDLPPSAVMNYGELNVLDDI
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.1
74
36.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.7
0.76
0.8
80.6
31.5
Minor 5ss
38.1
-1.3
3.2
59.5
44.6
Minor BPS
82.1
1.09
1
91
32.8

Associated Gene:

Gene:
YTHDC1
Ensembl Gene ID:
ENSAPLG00000009921
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025994
16401459 - 16415503
14045
ENSAPLT00000025312
16394268 - 16415503
21236
ENSAPLT00000010362
16374110 - 16415503
41394
ENSAPLT00000041490
16394268 - 16415503
21236
ENSAPLT00000027908
16394268 - 16415503
21236