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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16411603_16415475_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16411603 - 16415475
Intron Length:
3873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCCCG
5'SS Class:
major
3'SS Sequence:
CTTCTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTTTTTAACT
Flanking Amino Acid:
MAADSREEKDGELNVLDDI
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.3
48.3
47.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.7
0.76
0.8
80.6
31.5
Minor 5ss
42.7
-0.8
3.1
57.6
46.6
Minor BPS
82.1
1.09
1
91
32.8

Associated Gene:

Gene:
YTHDC1
Ensembl Gene ID:
ENSAPLG00000009921
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039475
16394268 - 16415503
21236