About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16439335_16440915_F

Intron Information:

Intron Rank:
141564
Intron Class:
major
Intron Phase:
Intron Coordinates:
16439335 - 16440915
Intron Length:
1581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACTGC
5'SS Class:
major
3'SS Sequence:
GTTTCCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTGTTTTGAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
57.6
42.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
76.8
0.6
1
73.2
37.1
Minor 5ss
42.5
-0.8
3.2
59.3
45.4
Minor BPS
63.7
0.43
1.3
71.2
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026241
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024925
16439217 - 16441853
2637