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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16446119_16453738_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16446119 - 16453738
Intron Length:
7620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTCTCCAATG
Flanking Amino Acid:
VLLTSRWCPEILTQMDTAVK
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.1
0.59
0.9
70.8
33.6
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
49.3
-0.1
1.9
59.92
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009678
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010088
16443116 - 16464088
20973