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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16463528_16463926_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16463528 - 16463926
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATGT
Flanking Amino Acid:
YLEGQVDACQGDSGGPLVHA
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85.6
0.8
0.6
85.7
21.5
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
67
0.61
1.9
87.39
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009678
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010088
16443116 - 16464088
20973