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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16506640_16509579_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
16506640 - 16509579
Intron Length:
2940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTGATACC
5'SS Class:
weak_major
3'SS Sequence:
TAGATCAGTCAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TACGGCAGAATA
Flanking Amino Acid:
CAAEPEQHALSIAKASSLRI
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.1
0.17
1.2
56.9
40.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
50.2
0.01
1.2
46.5
44.6
Minor 5ss
31.5
-2.1
2.8
35.5
34.5
Minor BPS
41.1
-0.6
2
49.99
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029530
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031119
16506574 - 16513885
7312