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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16509744_16513791_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
16509744 - 16513791
Intron Length:
4048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
CTTTCTAGGAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTGAC
U12 Branch Point Sequence:
CTTTCTAGGAAA
Flanking Amino Acid:
WLVSAAHCFRDELFIIRIGE
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
69.5
36.3
Major BPS
71.3
0.53
1.1
63.1
44.5
Major PPT
56.8
0.15
1.2
59.9
39.6
Minor 5ss
42.7
-0.8
2.7
50.7
39.7
Minor BPS
46.1
-0.3
1.9
61.01
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029530
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031119
16506574 - 16513885
7312