About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16511619_16513206_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16511619 - 16513206
Intron Length:
1588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCATA
5'SS Class:
major
3'SS Sequence:
CCTCTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AAATCTTTTATT
Flanking Amino Acid:
YLEGGVDACQGDSGGPLVTP
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1.1
78
38.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
84.1
0.77
0.7
76.3
32.3
Minor 5ss
48.5
-0.1
2.6
66.3
44.7
Minor BPS
59.6
0.38
1.6
72.19
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030285
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018668
16509371 - 16513368
3998