Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16520394_16522643_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

16520394 - 16522643

Intron Length:

2250

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAAGG

5'SS Class:

strong_major

3'SS Sequence:

GTTTGTATTCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

TCCAATGTAACC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.9

0.94

0.8

75.5

40.6

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

75.5

0.57

0.9

43.8

Minor 5ss

32.9

-2

2.9

40.4

45.3

Minor BPS

-0.4

2.1

55.25

43.3

Associated Gene:

Gene:

UBA6

Ensembl Gene ID:

ENSAPLG00000009066

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009508

16520282 - 16551375

31094