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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16524277_16525116_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16524277 - 16525116
Intron Length:
840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGCAA
U12 Branch Point Sequence:
TCTGCAACAGTC
Flanking Amino Acid:
SGIGGLGVEIAKNIILAGVK
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
53.2
0.08
1.4
65.6
41.4
Major PPT
95.9
1.03
0.5
95.6
15.1
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
37.8
-0.9
2
48.62
41.5

Associated Gene:

Gene:
UBA6
Ensembl Gene ID:
ENSAPLG00000009066
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009508
16520282 - 16551375
31094