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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16526985_16527967_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16526985 - 16527967
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTCTTGTTCACA
Flanking Amino Acid:
TDLSFLKQYQCVILTEVSLS
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
74
36.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83.9
0.76
0.8
79.1
32.9
Minor 5ss
40.6
-1
2.8
52.4
44.8
Minor BPS
49.4
-0
2.4
70.02
42.9

Associated Gene:

Gene:
UBA6
Ensembl Gene ID:
ENSAPLG00000009066
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009508
16520282 - 16551375
31094