About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16528049_16528619_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16528049 - 16528619
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGCA
5'SS Class:
major
3'SS Sequence:
CTTTGTCTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CAATTTTTACTT
Flanking Amino Acid:
FCHAQQPPIKFISADVYGIC
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
68.7
36.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.1
0.72
0.8
77.3
31.5
Minor 5ss
36.3
-1.6
3.3
48.6
47.1
Minor BPS
52.3
0.15
1.6
64.67
40.7

Associated Gene:

Gene:
UBA6
Ensembl Gene ID:
ENSAPLG00000009066
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009508
16520282 - 16551375
31094