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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16532141_16533157_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16532141 - 16533157
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CTTGTCTTAACA
Flanking Amino Acid:
CLVADFSKPEAPLQIHVAML
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
88.9
24.6
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
77.7
0.62
0.9
73.2
36
Minor 5ss
37.5
-1.4
2.8
51.2
45.3
Minor BPS
74
0.75
1.4
78.35
38.8

Associated Gene:

Gene:
UBA6
Ensembl Gene ID:
ENSAPLG00000009066
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009508
16520282 - 16551375
31094