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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16533941_16534192_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16533941 - 16534192
Intron Length:
252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CTGTTGTTATCA
Flanking Amino Acid:
MSVSKTLENKPQVNEDVVKW
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
80.3
26.9
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
85.9
0.81
0.8
83.8
30.8
Minor 5ss
32.3
-2
2.7
37
33.9
Minor BPS
47.6
-0.1
2.3
61.96
44.8

Associated Gene:

Gene:
UBA6
Ensembl Gene ID:
ENSAPLG00000009066
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009508
16520282 - 16551375
31094