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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16534337_16534990_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16534337 - 16534990
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTACTT
Flanking Amino Acid:
TGKFSPLQQWLYIDMLDIVT
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.4
43.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
91.8
0.94
0.7
87.5
30
Minor 5ss
36.2
-1.6
3.5
48.3
47.3
Minor BPS
64.3
0.53
1.5
79.64
37.1

Associated Gene:

Gene:
UBA6
Ensembl Gene ID:
ENSAPLG00000009066
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009508
16520282 - 16551375
31094