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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16535391_16536112_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16535391 - 16536112
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AGTTCTAAAAAT
Flanking Amino Acid:
QKLHNLNVFLVGCGAIGCEM
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.1
0.72
0.7
81.4
30.3
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
47.9
-0
2
69.47
41.1

Associated Gene:

Gene:
UBA6
Ensembl Gene ID:
ENSAPLG00000009066
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009508
16520282 - 16551375
31094