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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16536194_16536568_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16536194 - 16536568
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTGACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATAACTTAAGC
Flanking Amino Acid:
GVGTGQDKGLVTITDPDLIE
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
74.1
36.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
66.6
0.37
0.9
65.4
35.1
Minor 5ss
34.7
-1.7
2.9
41.5
39.2
Minor BPS
57.8
0.22
1.9
69.71
41

Associated Gene:

Gene:
UBA6
Ensembl Gene ID:
ENSAPLG00000009066
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009508
16520282 - 16551375
31094