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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16536647_16537946_F

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
16536647 - 16537946
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTGCACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATATTTGCACT
Flanking Amino Acid:
QFLFRPHHIQKPKSYTAAEA
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
73.8
37.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81.9
0.72
0.8
78.3
35.2
Minor 5ss
68.3
0.62
2.4
81.8
38.5
Minor BPS
48
-0
1.9
70.23
40.7

Associated Gene:

Gene:
UBA6
Ensembl Gene ID:
ENSAPLG00000009066
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009508
16520282 - 16551375
31094