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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16539583_16539692_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16539583 - 16539692
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
CTTCTTGTAATA
Flanking Amino Acid:
EHTIQWARDKFESSFSHKPS
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
83.9
0.76
0.8
76.9
37.3
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
49.1
-0
2
63.33
38

Associated Gene:

Gene:
UBA6
Ensembl Gene ID:
ENSAPLG00000009066
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009508
16520282 - 16551375
31094