Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16539774_16540109_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16539774 - 16540109

Intron Length:

336

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAGAA

5'SS Class:

strong_major

3'SS Sequence:

CTTTTGTATCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TCTGTTTTAATC

Flanking Amino Acid:

TYPSAEEVLQRIKSGESLEG

Intron Amino Acid Position:

641

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

71.3

34.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

76.8

0.6

0.9

40.6

Minor 5ss

28.3

-2.5

3.5

37.3

47.4

Minor BPS

64.9

0.45

1.3

68.66

38.1

Associated Gene:

Gene:

UBA6

Ensembl Gene ID:

ENSAPLG00000009066

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009508

16520282 - 16551375

31094