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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16540239_16541166_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16540239 - 16541166
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GTTATTCTAACT
Flanking Amino Acid:
VKFEKYFSHKALQLLHSFPL
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
78.5
0.64
0.8
70.7
35.5
Minor 5ss
34.7
-1.7
3
45.3
42.8
Minor BPS
58.7
0.35
1.7
77.87
38.2

Associated Gene:

Gene:
UBA6
Ensembl Gene ID:
ENSAPLG00000009066
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009508
16520282 - 16551375
31094