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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16544318_16545306_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16544318 - 16545306
Intron Length:
989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTACGAGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAACAAT
U12 Branch Point Sequence:
TTTTTCCTACGA
Flanking Amino Acid:
KFILSNEALESDLQMKPISF
Intron Amino Acid Position:
809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.7
33.7
Major BPS
57.4
0.18
1.3
65.4
38
Major PPT
62.7
0.29
1
59.7
35.7
Minor 5ss
33.7
-1.9
2.8
42.7
38.3
Minor BPS
49.1
-0
2.2
71.21
41.3

Associated Gene:

Gene:
UBA6
Ensembl Gene ID:
ENSAPLG00000009066
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009508
16520282 - 16551375
31094