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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16545501_16546719_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16545501 - 16546719
Intron Length:
1219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGATGTATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGATTCTGATGT
Flanking Amino Acid:
ATATAAVSGLVALELIKVVG
Intron Amino Acid Position:
874

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
73.5
0.53
1
66.6
43.7
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
47.1
-0.1
2
66.14
44.1

Associated Gene:

Gene:
UBA6
Ensembl Gene ID:
ENSAPLG00000009066
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009508
16520282 - 16551375
31094