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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16546848_16547599_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16546848 - 16547599
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTCTCTTTAAAA
Flanking Amino Acid:
ETVEVRRTEIRNGISFTIWD
Intron Amino Acid Position:
916

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66.4
45.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
70.1
0.45
1
66.6
37.3
Minor 5ss
31.5
-2.1
3.1
39.9
45.7
Minor BPS
68.9
0.59
1.4
71.99
40.5

Associated Gene:

Gene:
UBA6
Ensembl Gene ID:
ENSAPLG00000009066
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009508
16520282 - 16551375
31094