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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16548143_16550450_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16548143 - 16550450
Intron Length:
2308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAA
U12 Branch Point Sequence:
GTTACCTCAATA
Flanking Amino Acid:
MPGHIKRLKLTMQKLVKPSA
Intron Amino Acid Position:
977

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.2
87.1
30
Major BPS
58.5
0.21
1.1
59.9
32.5
Major PPT
85.5
0.8
0.7
81.4
30.6
Minor 5ss
40.7
-1
2.8
50.6
39.2
Minor BPS
65.3
0.47
1.6
73.65
37.9

Associated Gene:

Gene:
UBA6
Ensembl Gene ID:
ENSAPLG00000009066
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009508
16520282 - 16551375
31094