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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16557081_16558282_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16557081 - 16558282
Intron Length:
1202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGAAG
5'SS Class:
major
3'SS Sequence:
TGTTCCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTTCTAACT
Flanking Amino Acid:
WKGFILTVAKLSVPPDELLL
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
64.6
40.9
Major BPS
100
1.24
0.5
100
0
Major PPT
83.3
0.75
0.7
81.5
30.4
Minor 5ss
37.1
-1.5
3.2
47.3
48.3
Minor BPS
61.2
0.43
1.7
76.75
40

Associated Gene:

Gene:
STAP1
Ensembl Gene ID:
ENSAPLG00000008926
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009288
16554064 - 16562062
7999