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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16559131_16559639_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16559131 - 16559639
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
CTTGCTTCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
AAAATTACAACT
Flanking Amino Acid:
FFYDDKKAPTYSQKLDISAL
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
71.9
39.5
Major BPS
64.7
0.37
1
73
31.5
Major PPT
74.9
0.56
0.8
73.4
31.6
Minor 5ss
34.2
-1.8
2.9
48
41.7
Minor BPS
44.4
-0.3
1.7
58.51
37.8

Associated Gene:

Gene:
STAP1
Ensembl Gene ID:
ENSAPLG00000008926
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009288
16554064 - 16562062
7999