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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16559712_16561939_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16559712 - 16561939
Intron Length:
2228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
ATTGTCTTGACA
Flanking Amino Acid:
YLSVRHMKSQEFRAYWTELR
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
76
0.58
0.9
72.3
36.6
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
69.6
0.61
1.3
75.95
35.1

Associated Gene:

Gene:
STAP1
Ensembl Gene ID:
ENSAPLG00000008926
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009288
16554064 - 16562062
7999