About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16562358_16566512_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16562358 - 16566512
Intron Length:
4155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTTCTTAACA
Flanking Amino Acid:
TRLCCSVCPRAHFKKDYRTR
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
76.2
39.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.6
0.71
0.9
77.8
35
Minor 5ss
41.8
-0.9
3.5
56.2
48
Minor BPS
86.5
1.14
0.9
88.38
28

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008578
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032219
16562304 - 16574049
11746