Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16566560_16567749_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16566560 - 16567749

Intron Length:

1190

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAATTTCC

5'SS Class:

major

3'SS Sequence:

TCCCTCTTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

ATTTATTTATTT

Flanking Amino Acid:

DYRTRFCHGGGKKIDIQPGQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

1.1

68.6

37.3

Major BPS

88.7

0.96

0.8

36.5

Major PPT

79.8

0.67

0.7

72.6

32.2

Minor 5ss

41.1

-1

2.7

45.9

42.2

Minor BPS

59.9

0.39

1.7

79.07

37.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008578

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032219

16562304 - 16574049

11746

ENSAPLT00000025089

16566184 - 16574049

7866