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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16567812_16568102_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16567812 - 16568102
Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTCTTTATA
Flanking Amino Acid:
VLKFIQDCFESCDNELTISS
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
82.3
31.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
91.9
0.94
0.6
88.3
21.5
Minor 5ss
44.4
-0.6
3.4
64.7
41
Minor BPS
72.4
0.7
1.5
82.54
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008578
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032219
16562304 - 16574049
11746
ENSAPLT00000025089
16566184 - 16574049
7866
ENSAPLT00000008958
16567769 - 16584092
16324