Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16568201_16569047_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

16568201 - 16569047

Intron Length:

847

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTTAG

5'SS Class:

strong_major

3'SS Sequence:

CCACTGAATCTAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCGTTAT

U12 Branch Point Sequence:

TTATTCTCCACT

Flanking Amino Acid:

QTRTSIQTQRQSDAGLTNSV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.85

0.9

74.9

38.1

Major BPS

68.8

0.47

1.3

59.6

46.8

Major PPT

56.8

0.15

47.5

39.3

Minor 5ss

39.1

-1.2

2.8

40.9

45.3

Minor BPS

57.9

0.33

80.74

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008578

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032219

16562304 - 16574049

11746

ENSAPLT00000025089

16566184 - 16574049

7866